test: split integration/model suites

Split test suites for explicit runtime execution. - Move model-related tests under `src/models/*`. - Move CLI/integration tests under `src/integration/*`. - Add `src/store.helpers.unit.test.ts` for helper unit coverage. - Add shared Vitest config with default timeout and suite organization. - Remove legacy flat test files from `src/` root. - Keep core test commands in scripts supporting unit/models/integration runs.
2026-02-15 16:57:13 -04:00 · 2026-02-15 16:57:13 -04:00 · 9b89a51d10
commit 9b89a51d10
parent b88c10bf83
16 changed files with 818 additions and 166 deletions
--- a/CLAUDE.md
+++ b/CLAUDE.md
@ -122,6 +122,23 @@ bun src/qmd.ts <command>   # Run from source
 bun link               # Install globally as 'qmd'
 ```
 ## Test Layout
 - `src/*.test.ts` = unit tests
 - `src/models/*.test.ts` = tests that require model/runtime setup
 - `src/integration/*.test.ts` = integration tests (CLI subprocesses, daemon/server behavior)
 ### Run Order
 ```sh
 npx vitest run --reporter=verbose src/*.test.ts
 npx vitest run --reporter=verbose src/models/*.test.ts
 npx vitest run --reporter=verbose src/integration/*.test.ts
 ```
 Use this order for faster feedback:
 `unit -> models -> integration`.
 ## Architecture
 - SQLite FTS5 for full-text search (BM25)
--- a/bun.lock
+++ b/bun.lock
@ -6,13 +6,18 @@
      "name": "2025-12-07-bm25-q",
      "dependencies": {
        "@modelcontextprotocol/sdk": "^1.25.1",
        "better-sqlite3": "^11.0.0",
        "fast-glob": "^3.3.0",
        "node-llama-cpp": "^3.14.5",
        "picomatch": "^4.0.0",
        "sqlite-vec": "^0.1.7-alpha.2",
        "yaml": "^2.8.2",
        "zod": "^4.2.1",
      },
      "devDependencies": {
-        "@types/bun": "latest",
+        "@types/better-sqlite3": "^7.6.0",
        "tsx": "^4.0.0",
        "vitest": "^3.0.0",
      },
      "optionalDependencies": {
        "sqlite-vec-darwin-arm64": "^0.1.7-alpha.2",
@ -26,10 +31,64 @@
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@ -62,6 +121,12 @@
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    "toidentifier": ["toidentifier@1.0.1", "", {}, "sha512-o5sSPKEkg/DIQNmH43V0/uerLrpzVedkUh8tGNvaeXpfpuwjKenlSox/2O/BTlZUtEe+JG7s5YhEz608PlAHRA=="],
    "tsx": ["tsx@4.21.0", "", { "dependencies": { "esbuild": "~0.27.0", "get-tsconfig": "^4.7.5" }, "optionalDependencies": { "fsevents": "~2.3.3" }, "bin": { "tsx": "dist/cli.mjs" } }, "sha512-5C1sg4USs1lfG0GFb2RLXsdpXqBSEhAaA/0kPL01wxzpMqLILNxIxIOKiILz+cdg/pLnOUxFYOR5yhHU666wbw=="],
    "tunnel-agent": ["tunnel-agent@0.6.0", "", { "dependencies": { "safe-buffer": "^5.0.1" } }, "sha512-McnNiV1l8RYeY8tBgEpuodCC1mLUdbSN+CYBL7kJsJNInOP8UjDDEwdk6Mw60vdLLrr5NHKZhMAOSrR2NZuQ+w=="],
    "type-is": ["type-is@2.0.1", "", { "dependencies": { "content-type": "^1.0.5", "media-typer": "^1.1.0", "mime-types": "^3.0.0" } }, "sha512-OZs6gsjF4vMp32qrCbiVSkrFmXtG/AZhY3t0iAMrMBiAZyV9oALtXO8hsrHbMXF9x6L3grlFuwW2oAz7cav+Gw=="],
    "typescript": ["typescript@5.9.3", "", { "bin": { "tsc": "bin/tsc", "tsserver": "bin/tsserver" } }, "sha512-jl1vZzPDinLr9eUt3J/t7V6FgNEw9QjvBPdysz9KfQDD41fQrC2Y4vKQdiaUpFT4bXlb1RHhLpp8wtm6M5TgSw=="],
@ -528,8 +805,16 @@
    "vary": ["vary@1.1.2", "", {}, "sha512-BNGbWLfd0eUPabhkXUVm0j8uuvREyTh5ovRa/dyow/BqAbZJyC+5fU+IzQOzmAKzYqYRAISoRhdQr3eIZ/PXqg=="],
    "vite": ["vite@7.3.1", "", { "dependencies": { "esbuild": "^0.27.0", "fdir": "^6.5.0", "picomatch": "^4.0.3", "postcss": "^8.5.6", "rollup": "^4.43.0", "tinyglobby": "^0.2.15" }, "optionalDependencies": { "fsevents": "~2.3.3" }, "peerDependencies": { "@types/node": "^20.19.0 || >=22.12.0", "jiti": ">=1.21.0", "less": "^4.0.0", "lightningcss": "^1.21.0", "sass": "^1.70.0", "sass-embedded": "^1.70.0", "stylus": ">=0.54.8", "sugarss": "^5.0.0", "terser": "^5.16.0", "tsx": "^4.8.1", "yaml": "^2.4.2" }, "optionalPeers": ["@types/node", "jiti", "less", "lightningcss", "sass", "sass-embedded", "stylus", "sugarss", "terser", "tsx", "yaml"], "bin": { "vite": "bin/vite.js" } }, "sha512-w+N7Hifpc3gRjZ63vYBXA56dvvRlNWRczTdmCBBa+CotUzAPf5b7YMdMR/8CQoeYE5LX3W4wj6RYTgonm1b9DA=="],
    "vite-node": ["vite-node@3.2.4", "", { "dependencies": { "cac": "^6.7.14", "debug": "^4.4.1", "es-module-lexer": "^1.7.0", "pathe": "^2.0.3", "vite": "^5.0.0 || ^6.0.0 || ^7.0.0-0" }, "bin": { "vite-node": "vite-node.mjs" } }, "sha512-EbKSKh+bh1E1IFxeO0pg1n4dvoOTt0UDiXMd/qn++r98+jPO1xtJilvXldeuQ8giIB5IkpjCgMleHMNEsGH6pg=="],
    "vitest": ["vitest@3.2.4", "", { "dependencies": { "@types/chai": "^5.2.2", "@vitest/expect": "3.2.4", "@vitest/mocker": "3.2.4", "@vitest/pretty-format": "^3.2.4", "@vitest/runner": "3.2.4", "@vitest/snapshot": "3.2.4", "@vitest/spy": "3.2.4", "@vitest/utils": "3.2.4", "chai": "^5.2.0", "debug": "^4.4.1", "expect-type": "^1.2.1", "magic-string": "^0.30.17", "pathe": "^2.0.3", "picomatch": "^4.0.2", "std-env": "^3.9.0", "tinybench": "^2.9.0", "tinyexec": "^0.3.2", "tinyglobby": "^0.2.14", "tinypool": "^1.1.1", "tinyrainbow": "^2.0.0", "vite": "^5.0.0 || ^6.0.0 || ^7.0.0-0", "vite-node": "3.2.4", "why-is-node-running": "^2.3.0" }, "peerDependencies": { "@edge-runtime/vm": "*", "@types/debug": "^4.1.12", "@types/node": "^18.0.0 || ^20.0.0 || >=22.0.0", "@vitest/browser": "3.2.4", "@vitest/ui": "3.2.4", "happy-dom": "*", "jsdom": "*" }, "optionalPeers": ["@edge-runtime/vm", "@types/debug", "@types/node", "@vitest/browser", "@vitest/ui", "happy-dom", "jsdom"], "bin": { "vitest": "vitest.mjs" } }, "sha512-LUCP5ev3GURDysTWiP47wRRUpLKMOfPh+yKTx3kVIEiu5KOMeqzpnYNsKyOoVrULivR8tLcks4+lga33Whn90A=="],
    "which": ["which@5.0.0", "", { "dependencies": { "isexe": "^3.1.1" }, "bin": { "node-which": "bin/which.js" } }, "sha512-JEdGzHwwkrbWoGOlIHqQ5gtprKGOenpDHpxE9zVR1bWbOtYRyPPHMe9FaP6x61CmNaTThSkb0DAJte5jD+DmzQ=="],
    "why-is-node-running": ["why-is-node-running@2.3.0", "", { "dependencies": { "siginfo": "^2.0.0", "stackback": "0.0.2" }, "bin": { "why-is-node-running": "cli.js" } }, "sha512-hUrmaWBdVDcxvYqnyh09zunKzROWjbZTiNy8dBEjkS7ehEDQibXJ7XvlmtbwuTclUiIyN+CyXQD4Vmko8fNm8w=="],
    "wide-align": ["wide-align@1.1.5", "", { "dependencies": { "string-width": "^1.0.2 || 2 || 3 || 4" } }, "sha512-eDMORYaPNZ4sQIuuYPDHdQvf4gyCF9rEEV/yPxGfwPkRodwEgiMUUXTx/dex+Me0wxx53S+NgUHaP7y3MGlDmg=="],
    "wrap-ansi": ["wrap-ansi@7.0.0", "", { "dependencies": { "ansi-styles": "^4.0.0", "string-width": "^4.1.0", "strip-ansi": "^6.0.0" } }, "sha512-YVGIj2kamLSTxw6NsZjoBxfSwsn0ycdesmc4p+Q21c5zPuZ1pl+NfxVdxPtdHvmNVOQ6XSYG4AUtyt/Fi7D16Q=="],
@ -572,14 +857,20 @@
    "ipull/pretty-ms": ["pretty-ms@8.0.0", "", { "dependencies": { "parse-ms": "^3.0.0" } }, "sha512-ASJqOugUF1bbzI35STMBUpZqdfYKlJugy6JBziGi2EE+AL5JPJGSzvpeVXojxrr0ViUYoToUjb5kjSEGf7Y83Q=="],
    "micromatch/picomatch": ["picomatch@2.3.1", "", {}, "sha512-JU3teHTNjmE2VCGFzuY8EXzCDVwEqB2a8fsIvwaStHhAWJEeVd1o1QD80CU6+ZdEXXSLbSsuLwJjkCBWqRQUVA=="],
    "minizlib/minipass": ["minipass@3.3.6", "", { "dependencies": { "yallist": "^4.0.0" } }, "sha512-DxiNidxSEK+tHG6zOIklvNOwm3hvCrbUrdtzY74U6HKTJxvIDfOUL5W5P2Ghd3DTkhhKPYGqeNUIh5qcM4YBfw=="],
    "ora/log-symbols": ["log-symbols@6.0.0", "", { "dependencies": { "chalk": "^5.3.0", "is-unicode-supported": "^1.3.0" } }, "sha512-i24m8rpwhmPIS4zscNzK6MSEhk0DUWa/8iYQWxhffV8jkI4Phvs3F+quL5xvS0gdQR0FyTCMMH33Y78dDTzzIw=="],
    "postcss/nanoid": ["nanoid@3.3.11", "", { "bin": { "nanoid": "bin/nanoid.cjs" } }, "sha512-N8SpfPUnUp1bK+PMYW8qSWdl9U+wwNWI4QKxOYDy9JAro3WMX7p2OeVRF9v+347pnakNevPmiHhNmZ2HbFA76w=="],
    "proper-lockfile/retry": ["retry@0.12.0", "", {}, "sha512-9LkiTwjUh6rT555DtE9rTX+BKByPfrMzEAtnlEtdEwr3Nkffwiihqe2bWADg+OQRjt9gl6ICdmB/ZFDCGAtSow=="],
    "restore-cursor/signal-exit": ["signal-exit@4.1.0", "", {}, "sha512-bzyZ1e88w9O1iNJbKnOlvYTrWPDl46O1bG0D3XInv+9tkPrxrN8jUUTiFlDkkmKWgn1M6CfIA13SuGqOa9Korw=="],
    "tar/chownr": ["chownr@2.0.0", "", {}, "sha512-bIomtDF5KGpdogkLd9VspvFzk9KfpyyGlS8YFVZl7TGPBHL5snIOnxeshwVgPteQ9b4Eydl+pVbIyE1DcvCWgQ=="],
    "wide-align/string-width": ["string-width@4.2.3", "", { "dependencies": { "emoji-regex": "^8.0.0", "is-fullwidth-code-point": "^3.0.0", "strip-ansi": "^6.0.1" } }, "sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g=="],
    "wrap-ansi/ansi-styles": ["ansi-styles@4.3.0", "", { "dependencies": { "color-convert": "^2.0.1" } }, "sha512-zbB9rCJAT1rbjiVDb2hqKFHNYLxgtk8NURxZ3IZwD3F6NtxbXZQCnnSi1Lkx+IDohdPlFp222wVALIheZJQSEg=="],
--- a/39
+++ b/39
@ -2,13 +2,13 @@
 # qmd - Quick Markdown Search
 set -euo pipefail
-# Find bun - prefer PATH, fallback to known locations
+# Find node - prefer PATH, fallback to known locations
-find_bun() {
+find_node() {
-  # First: check if bun is in PATH and modern enough
+  if command -v node &>/dev/null; then
-  if command -v bun &>/dev/null; then
+    local ver=$(node --version 2>/dev/null | sed 's/^v//' || echo "0")
-    local ver=$(bun --version 2>/dev/null || echo "0")
+    local major="${ver%%.*}"
-    if [[ "$ver" =~ ^1\. ]]; then
+    if [[ "$major" -ge 22 ]]; then
-      command -v bun
+      command -v node
      return 0
    fi
  fi
@ -16,23 +16,14 @@ find_bun() {
  # Fallback: derive paths (need HOME)
  : "${HOME:=$(eval echo ~)}"
  # If running from .bun tree, use that bun
  if [[ "${BASH_SOURCE[0]}" == */.bun/* ]]; then
    local bun_home="${BASH_SOURCE[0]%%/.bun/*}/.bun"
    if [[ -x "$bun_home/bin/bun" ]]; then
      echo "$bun_home/bin/bun"
      return 0
    fi
  fi
  # Check known locations
  local candidates=(
-    "$HOME/.local/share/mise/installs/bun/latest/bin/bun"
+    "$HOME/.local/share/mise/installs/node/latest/bin/node"
-    "$HOME/.local/share/mise/shims/bun"
+    "$HOME/.local/share/mise/shims/node"
-    "$HOME/.asdf/shims/bun"
+    "$HOME/.asdf/shims/node"
-    "/opt/homebrew/bin/bun"
+    "/opt/homebrew/bin/node"
-    "/usr/local/bin/bun"
+    "/usr/local/bin/node"
-    "$HOME/.bun/bin/bun"
+    "$HOME/.nvm/current/bin/node"
  )
  for c in "${candidates[@]}"; do
    [[ -x "$c" ]] && { echo "$c"; return 0; }
@ -41,7 +32,7 @@ find_bun() {
  return 1
 }
-BUN=$(find_bun) || { echo "Error: bun not found. Install from https://bun.sh" >&2; exit 1; }
+NODE=$(find_node) || { echo "Error: node (>=22) not found. Install from https://nodejs.org" >&2; exit 1; }
 # Resolve symlinks to find script location
 SOURCE="${BASH_SOURCE[0]}"
@ -52,4 +43,4 @@ while [[ -L "$SOURCE" ]]; do
 done
 SCRIPT_DIR="$(cd -P "$(dirname "$SOURCE")" && pwd)"
-exec "$BUN" "$SCRIPT_DIR/src/qmd.ts" "$@"
+exec "$NODE" --import tsx "$SCRIPT_DIR/src/qmd.ts" "$@"
--- a/src/eval-bm25.test.ts
+++ b/src/eval-bm25.test.ts
@ -0,0 +1,135 @@
 /**
 * BM25-only evaluation tests (unit layer).
 *
 * This is a fast suite copied from the BM25 block in `models/eval.test.ts`.
 */
 import { describe, test, expect, beforeAll, afterAll } from "vitest";
 import { mkdtempSync, rmSync, readFileSync, readdirSync } from "fs";
 import { join, dirname } from "path";
 import { tmpdir } from "os";
 import Database from "better-sqlite3";
 import { createHash } from "crypto";
 import { fileURLToPath } from "url";
 import {
  createStore,
  searchFTS,
  insertDocument,
  insertContent,
 } from "./store";
 // Set INDEX_PATH before importing store to prevent using global index
 const tempDir = mkdtempSync(join(tmpdir(), "qmd-eval-unit-"));
 process.env.INDEX_PATH = join(tempDir, "eval-unit.sqlite");
 afterAll(() => {
  rmSync(tempDir, { recursive: true, force: true });
 });
 const evalQueries: {
  query: string;
  expectedDoc: string;
  difficulty: "easy" | "medium" | "hard" | "fusion";
 }[] = [
  // EASY: Exact keyword matches
  { query: "API versioning", expectedDoc: "api-design", difficulty: "easy" },
  { query: "Series A fundraising", expectedDoc: "fundraising", difficulty: "easy" },
  { query: "CAP theorem", expectedDoc: "distributed-systems", difficulty: "easy" },
  { query: "overfitting machine learning", expectedDoc: "machine-learning", difficulty: "easy" },
  { query: "remote work VPN", expectedDoc: "remote-work", difficulty: "easy" },
  { query: "Project Phoenix retrospective", expectedDoc: "product-launch", difficulty: "easy" },
  // MEDIUM: Semantic/conceptual queries
  { query: "how to structure REST endpoints", expectedDoc: "api-design", difficulty: "medium" },
  { query: "raising money for startup", expectedDoc: "fundraising", difficulty: "medium" },
  { query: "consistency vs availability tradeoffs", expectedDoc: "distributed-systems", difficulty: "medium" },
  { query: "how to prevent models from memorizing data", expectedDoc: "machine-learning", difficulty: "medium" },
  { query: "working from home guidelines", expectedDoc: "remote-work", difficulty: "medium" },
  { query: "what went wrong with the launch", expectedDoc: "product-launch", difficulty: "medium" },
  // HARD: Vague, partial memory, indirect
  { query: "nouns not verbs", expectedDoc: "api-design", difficulty: "hard" },
  { query: "Sequoia investor pitch", expectedDoc: "fundraising", difficulty: "hard" },
  { query: "Raft algorithm leader election", expectedDoc: "distributed-systems", difficulty: "hard" },
  { query: "F1 score precision recall", expectedDoc: "machine-learning", difficulty: "hard" },
  { query: "quarterly team gathering travel", expectedDoc: "remote-work", difficulty: "hard" },
  { query: "beta program 47 bugs", expectedDoc: "product-launch", difficulty: "hard" },
  // FUSION: Multi-signal queries that need both lexical AND semantic matching
  // These should have weak individual scores but strong combined RRF scores
  { query: "how much runway before running out of money", expectedDoc: "fundraising", difficulty: "fusion" },
  { query: "datacenter replication sync strategy", expectedDoc: "distributed-systems", difficulty: "fusion" },
  { query: "splitting data for training and testing", expectedDoc: "machine-learning", difficulty: "fusion" },
  { query: "JSON response codes error messages", expectedDoc: "api-design", difficulty: "fusion" },
  { query: "video calls camera async messaging", expectedDoc: "remote-work", difficulty: "fusion" },
  { query: "CI/CD pipeline testing coverage", expectedDoc: "product-launch", difficulty: "fusion" },
 ];
 function matchesExpected(filepath: string, expectedDoc: string): boolean {
  return filepath.toLowerCase().includes(expectedDoc);
 }
 function calcHitRate(
  queries: typeof evalQueries,
  searchFn: (query: string) => { filepath: string }[],
  topK: number
 ): number {
  let hits = 0;
  for (const { query, expectedDoc } of queries) {
    const results = searchFn(query).slice(0, topK);
    if (results.some(r => matchesExpected(r.filepath, expectedDoc))) hits++;
  }
  return hits / queries.length;
 }
 describe("BM25 Search (FTS)", () => {
  let store: ReturnType<typeof createStore>;
  let db: Database;
  beforeAll(() => {
    store = createStore();
    db = store.db;
    // Load and index eval documents
    const evalDocsDir = join(dirname(fileURLToPath(import.meta.url)), "../test/eval-docs");
    const files = readdirSync(evalDocsDir).filter(f => f.endsWith(".md"));
    for (const file of files) {
      const content = readFileSync(join(evalDocsDir, file), "utf-8");
      const title = content.split("\n")[0]?.replace(/^#\s*/, "") || file;
      const hash = createHash("sha256").update(content).digest("hex").slice(0, 12);
      const now = new Date().toISOString();
      insertContent(db, hash, content, now);
      insertDocument(db, "eval-docs", file, title, hash, now, now);
    }
  });
  afterAll(() => {
    store.close();
  });
  test("easy queries: ≥80% Hit@3", () => {
    const easyQueries = evalQueries.filter(q => q.difficulty === "easy");
    const hitRate = calcHitRate(easyQueries, q => searchFTS(db, q, 5), 3);
    expect(hitRate).toBeGreaterThanOrEqual(0.8);
  });
  test("medium queries: ≥15% Hit@3 (BM25 struggles with semantic)", () => {
    const mediumQueries = evalQueries.filter(q => q.difficulty === "medium");
    const hitRate = calcHitRate(mediumQueries, q => searchFTS(db, q, 5), 3);
    expect(hitRate).toBeGreaterThanOrEqual(0.15);
  });
  test("hard queries: ≥15% Hit@5 (BM25 baseline)", () => {
    const hardQueries = evalQueries.filter(q => q.difficulty === "hard");
    const hitRate = calcHitRate(hardQueries, q => searchFTS(db, q, 5), 5);
    expect(hitRate).toBeGreaterThanOrEqual(0.15);
  });
  test("overall Hit@3 ≥40% (BM25 baseline)", () => {
    const hitRate = calcHitRate(evalQueries, q => searchFTS(db, q, 5), 3);
    expect(hitRate).toBeGreaterThanOrEqual(0.4);
  });
 });
--- a/src/formatter.test.ts
+++ b/src/formatter.test.ts
@ -4,7 +4,7 @@
 * Run with: bun test formatter.test.ts
 */
-import { describe, test, expect } from "bun:test";
+import { describe, test, expect } from "vitest";
 import {
  // Search result formatters
  searchResultsToJson,
--- a/src/integration/cli.test.ts
+++ b/src/integration/cli.test.ts
@ -5,10 +5,14 @@
 * These tests spawn actual qmd processes to verify end-to-end functionality.
 */
-import { describe, test, expect, beforeAll, afterAll, beforeEach } from "bun:test";
+import { describe, test, expect, beforeAll, afterAll, beforeEach } from "vitest";
 import { mkdtemp, rm, writeFile, mkdir } from "fs/promises";
 import { existsSync } from "fs";
 import { tmpdir } from "os";
-import { join } from "path";
+import { join, dirname } from "path";
 import { fileURLToPath } from "url";
 import { spawn } from "child_process";
 import { setTimeout as sleep } from "timers/promises";
 // Test fixtures directory and database path
 let testDir: string;
@ -18,8 +22,18 @@ let fixturesDir: string;
 let testCounter = 0; // Unique counter for each test run
 // Get the directory where this test file lives (same as qmd.ts)
-const qmdDir = import.meta.dir;
+const qmdDir = dirname(fileURLToPath(import.meta.url));
-const qmdScript = join(qmdDir, "qmd.ts");
+const qmdSrcDir = join(qmdDir, "..");
 const projectRoot = join(qmdSrcDir, "..");
 const qmdScript = join(qmdSrcDir, "qmd.ts");
 // Resolve tsx binary from project's node_modules (not cwd-dependent)
 const tsxBin = (() => {
  const candidate = join(projectRoot, "node_modules", ".bin", "tsx");
  if (existsSync(candidate)) {
    return candidate;
  }
  return join(process.cwd(), "node_modules", ".bin", "tsx");
 })();
 // Helper to run qmd command with test database
 async function runQmd(
@ -29,7 +43,7 @@ async function runQmd(
  const workingDir = options.cwd || fixturesDir;
  const dbPath = options.dbPath || testDbPath;
  const configDir = options.configDir || testConfigDir;
-  const proc = Bun.spawn(["bun", qmdScript, ...args], {
+  const proc = spawn(tsxBin, [qmdScript, ...args], {
    cwd: workingDir,
    env: {
      ...process.env,
@ -38,13 +52,27 @@ async function runQmd(
      PWD: workingDir, // Must explicitly set PWD since getPwd() checks this
      ...options.env,
    },
-    stdout: "pipe",
+    stdio: ["ignore", "pipe", "pipe"],
    stderr: "pipe",
  });
-  const stdout = await new Response(proc.stdout).text();
+  const stdoutPromise = new Promise<string>((resolve, reject) => {
-  const stderr = await new Response(proc.stderr).text();
+    let data = "";
-  const exitCode = await proc.exited;
+    proc.stdout?.on("data", (chunk: Buffer) => { data += chunk.toString(); });
    proc.once("error", reject);
    proc.stdout?.once("end", () => resolve(data));
  });
  const stderrPromise = new Promise<string>((resolve, reject) => {
    let data = "";
    proc.stderr?.on("data", (chunk: Buffer) => { data += chunk.toString(); });
    proc.once("error", reject);
    proc.stderr?.once("end", () => resolve(data));
  });
  const exitCode = await new Promise<number>((resolve, reject) => {
    proc.once("error", reject);
    proc.on("close", (code) => resolve(code ?? 1));
  });
  const stdout = await stdoutPromise;
  const stderr = await stderrPromise;
  return { stdout, stderr, exitCode };
 }
@ -438,8 +466,7 @@ describe("CLI Error Handling", () => {
    expect(exitCode).toBe(0);
    // The custom database should exist
-    const file = Bun.file(customDbPath);
+    expect(existsSync(customDbPath)).toBe(true);
    expect(await file.exists()).toBe(true);
  });
 });
@ -992,18 +1019,17 @@ describe("mcp http daemon", () => {
  }
  /** Spawn a foreground HTTP server (non-blocking) and return the process */
-  function spawnHttpServer(port: number): ReturnType<typeof Bun.spawn> {
+  function spawnHttpServer(port: number): import("child_process").ChildProcess {
-    const proc = Bun.spawn(["bun", qmdScript, "mcp", "--http", "--port", String(port)], {
+    const proc = spawn(tsxBin, [qmdScript, "mcp", "--http", "--port", String(port)], {
      cwd: fixturesDir,
      env: {
        ...process.env,
        INDEX_PATH: daemonDbPath,
        QMD_CONFIG_DIR: daemonConfigDir,
      },
-      stdout: "pipe",
+      stdio: ["ignore", "pipe", "pipe"],
      stderr: "pipe",
    });
-    spawnedPids.push(proc.pid);
+    if (proc.pid) spawnedPids.push(proc.pid);
    return proc;
  }
@ -1015,7 +1041,7 @@ describe("mcp http daemon", () => {
        const res = await fetch(`http://localhost:${port}/health`);
        if (res.ok) return true;
      } catch { /* not ready yet */ }
-      await Bun.sleep(200);
+      await sleep(200);
    }
    return false;
  }
@ -1073,7 +1099,7 @@ describe("mcp http daemon", () => {
      expect(body.status).toBe("ok");
    } finally {
      proc.kill("SIGTERM");
-      await proc.exited;
+      await new Promise(r => proc.on("close", r));
    }
  });
@ -1102,7 +1128,7 @@ describe("mcp http daemon", () => {
    // Clean up
    process.kill(pid, "SIGTERM");
-    await Bun.sleep(500);
+    await sleep(500);
    try { require("fs").unlinkSync(pidPath()); } catch {}
  });
@ -1129,7 +1155,7 @@ describe("mcp http daemon", () => {
    expect(require("fs").existsSync(pidPath())).toBe(false);
    // Process should be dead
-    await Bun.sleep(500);
+    await sleep(500);
    expect(() => process.kill(pid, 0)).toThrow();
  });
@ -1169,7 +1195,7 @@ describe("mcp http daemon", () => {
    // Clean up first daemon
    process.kill(pid, "SIGTERM");
-    await Bun.sleep(500);
+    await sleep(500);
    try { require("fs").unlinkSync(pidPath()); } catch {}
  });
@ -1193,7 +1219,7 @@ describe("mcp http daemon", () => {
    const ready = await waitForServer(port);
    expect(ready).toBe(true);
    process.kill(pid, "SIGTERM");
-    await Bun.sleep(500);
+    await sleep(500);
    try { require("fs").unlinkSync(pidPath()); } catch {}
  });
 });
--- a/src/models/eval.test.ts
+++ b/src/models/eval.test.ts
@ -10,11 +10,14 @@
 * 3. Hybrid (RRF) - combined lexical + vector with rank fusion
 */
-import { describe, test, expect, beforeAll, afterAll } from "bun:test";
+import { describe, test, expect, beforeAll, afterAll } from "vitest";
 import { mkdtempSync, rmSync, readFileSync, readdirSync } from "fs";
 import { join } from "path";
 import { tmpdir } from "os";
-import Database from "bun:sqlite";
+import Database from "better-sqlite3";
 import { createHash } from "crypto";
 import { fileURLToPath } from "url";
 import { dirname } from "path";
 // Set INDEX_PATH before importing store to prevent using global index
 const tempDir = mkdtempSync(join(tmpdir(), "qmd-eval-"));
@ -31,8 +34,8 @@ import {
  reciprocalRankFusion,
  DEFAULT_EMBED_MODEL,
  type RankedResult,
-} from "./store";
+} from "../store";
-import { getDefaultLlamaCpp, formatDocForEmbedding, disposeDefaultLlamaCpp } from "./llm";
+import { getDefaultLlamaCpp, formatDocForEmbedding, disposeDefaultLlamaCpp } from "../llm";
 // Eval queries with expected documents
 const evalQueries: {
@ -106,13 +109,13 @@ describe("BM25 Search (FTS)", () => {
    db = store.db;
    // Load and index eval documents
-    const evalDocsDir = join(import.meta.dir, "../test/eval-docs");
+    const evalDocsDir = join(dirname(fileURLToPath(import.meta.url)), "../../test/eval-docs");
    const files = readdirSync(evalDocsDir).filter(f => f.endsWith(".md"));
    for (const file of files) {
      const content = readFileSync(join(evalDocsDir, file), "utf-8");
      const title = content.split("\n")[0]?.replace(/^#\s*/, "") || file;
-      const hash = Bun.hash(content).toString(16).slice(0, 12);
+      const hash = createHash("sha256").update(content).digest("hex").slice(0, 12);
      const now = new Date().toISOString();
      insertContent(db, hash, content, now);
@ -178,12 +181,12 @@ describe("Vector Search", () => {
    const llm = getDefaultLlamaCpp();
    store.ensureVecTable(768); // embeddinggemma uses 768 dimensions
-    const evalDocsDir = join(import.meta.dir, "../test/eval-docs");
+    const evalDocsDir = join(dirname(fileURLToPath(import.meta.url)), "../../test/eval-docs");
    const files = readdirSync(evalDocsDir).filter(f => f.endsWith(".md"));
    for (const file of files) {
      const content = readFileSync(join(evalDocsDir, file), "utf-8");
-      const hash = Bun.hash(content).toString(16).slice(0, 12);
+      const hash = createHash("sha256").update(content).digest("hex").slice(0, 12);
      const title = content.split("\n")[0]?.replace(/^#\s*/, "") || file;
      // Chunk and embed
--- a/src/models/llm.test.ts
+++ b/src/models/llm.test.ts
@ -7,7 +7,7 @@
 * rerank functions first to trigger model downloads.
 */
-import { describe, test, expect, beforeAll, afterAll } from "bun:test";
+import { describe, test, expect, beforeAll, afterAll } from "vitest";
 import {
  LlamaCpp,
  getDefaultLlamaCpp,
@ -17,7 +17,7 @@ import {
  SessionReleasedError,
  type RerankDocument,
  type ILLMSession,
-} from "./llm.js";
+} from "../llm.js";
 // =============================================================================
 // Singleton Tests (no model loading required)
--- a/src/models/mcp.test.ts
+++ b/src/models/mcp.test.ts
@ -5,17 +5,17 @@
 * Uses mocked Ollama responses and a test database.
 */
-import { describe, test, expect, beforeAll, afterAll, beforeEach, afterEach } from "bun:test";
+import { describe, test, expect, beforeAll, afterAll, beforeEach, afterEach } from "vitest";
-import { Database } from "bun:sqlite";
+import Database from "better-sqlite3";
 import * as sqliteVec from "sqlite-vec";
 import { McpServer, ResourceTemplate } from "@modelcontextprotocol/sdk/server/mcp.js";
 import { z } from "zod";
-import { getDefaultLlamaCpp, disposeDefaultLlamaCpp } from "./llm";
+import { getDefaultLlamaCpp, disposeDefaultLlamaCpp } from "../llm";
 import { mkdtemp, writeFile, readdir, unlink, rmdir } from "node:fs/promises";
 import { join } from "node:path";
 import { tmpdir } from "node:os";
 import YAML from "yaml";
-import type { CollectionConfig } from "./collections";
+import type { CollectionConfig } from "../collections";
 // =============================================================================
 // Test Database Setup
@ -192,8 +192,8 @@ import {
  DEFAULT_RERANK_MODEL,
  DEFAULT_MULTI_GET_MAX_BYTES,
  createStore,
-} from "./store";
+} from "../store";
-import type { RankedResult } from "./store";
+import type { RankedResult } from "../store";
 // Note: searchResultsToMcpCsv no longer used in MCP - using structuredContent instead
 // =============================================================================
@ -649,7 +649,7 @@ describe("MCP Server", () => {
        WHERE d.path = ? AND d.active = 1
      `).get(path) as { filepath: string; display_path: string; body: string } | null;
-      expect(doc).toBeNull();
+      expect(doc).toBeUndefined();
    });
    test("includes context in document body", () => {
@ -865,8 +865,8 @@ describe("MCP Server", () => {
 // HTTP Transport Tests
 // =============================================================================
-import { startMcpHttpServer, type HttpServerHandle } from "./mcp";
+import { startMcpHttpServer, type HttpServerHandle } from "../mcp";
-import { enableProductionMode } from "./store";
+import { enableProductionMode } from "../store";
 describe("MCP HTTP Transport", () => {
  let handle: HttpServerHandle;
--- a/src/models/store.test.ts
+++ b/src/models/store.test.ts
@ -6,14 +6,14 @@
 * LLM operations use LlamaCpp with local GGUF models (node-llama-cpp).
 */
-import { describe, test, expect, beforeAll, afterAll, beforeEach, afterEach, mock, spyOn } from "bun:test";
+import { describe, test, expect, beforeAll, afterAll, beforeEach, afterEach, vi } from "vitest";
-import { Database } from "bun:sqlite";
+import Database from "better-sqlite3";
 import * as sqliteVec from "sqlite-vec";
 import { unlink, mkdtemp, rmdir, writeFile } from "node:fs/promises";
 import { tmpdir } from "node:os";
 import { join } from "node:path";
 import YAML from "yaml";
-import { disposeDefaultLlamaCpp } from "./llm.js";
+import { disposeDefaultLlamaCpp } from "../llm.js";
 import {
  createStore,
  verifySqliteVecLoaded,
@ -43,8 +43,8 @@ import {
  type DocumentResult,
  type SearchResult,
  type RankedResult,
-} from "./store.js";
+} from "../store.js";
-import type { CollectionConfig } from "./collections.js";
+import type { CollectionConfig } from "../collections.js";
 // =============================================================================
 // LlamaCpp Setup
@ -248,7 +248,7 @@ afterAll(async () => {
 describe("Path Utilities", () => {
  test("homedir returns HOME environment variable", () => {
    const result = homedir();
-    expect(result).toBe(Bun.env.HOME || "/tmp");
+    expect(result).toBe(process.env.HOME || "/tmp");
  });
  test("resolve handles absolute paths", () => {
@ -257,7 +257,7 @@ describe("Path Utilities", () => {
  });
  test("resolve handles relative paths", () => {
-    const pwd = Bun.env.PWD || process.cwd();
+    const pwd = process.env.PWD || process.cwd();
    expect(resolve("foo")).toBe(`${pwd}/foo`);
    expect(resolve("foo", "bar")).toBe(`${pwd}/foo/bar`);
  });
--- a/src/qmd.ts
+++ b/src/qmd.ts
@ -1,6 +1,8 @@
-#!/usr/bin/env bun
+import Database from "better-sqlite3";
-import { Database } from "bun:sqlite";
+import fastGlob from "fast-glob";
-import { Glob, $ } from "bun";
+import { execSync, spawn as nodeSpawn } from "child_process";
 import { fileURLToPath } from "url";
 import { dirname, join as pathJoin } from "path";
 import { parseArgs } from "util";
 import { readFileSync, statSync, existsSync, unlinkSync, writeFileSync, openSync, closeSync, mkdirSync } from "fs";
 import {
@ -279,8 +281,8 @@ async function showStatus(): Promise<void> {
  console.log(`Size:  ${formatBytes(indexSize)}`);
  // MCP daemon status (check PID file liveness)
-  const mcpCacheDir = Bun.env.XDG_CACHE_HOME
+  const mcpCacheDir = process.env.XDG_CACHE_HOME
-    ? resolve(Bun.env.XDG_CACHE_HOME, "qmd")
+    ? resolve(process.env.XDG_CACHE_HOME, "qmd")
    : resolve(homedir(), ".cache", "qmd");
  const mcpPidPath = resolve(mcpCacheDir, "mcp.pid");
  if (existsSync(mcpPidPath)) {
@ -423,15 +425,19 @@ async function updateCollections(): Promise<void> {
    if (yamlCol?.update) {
      console.log(`${c.dim}    Running update command: ${yamlCol.update}${c.reset}`);
      try {
-        const proc = Bun.spawn(["/usr/bin/env", "bash", "-c", yamlCol.update], {
+        const proc = nodeSpawn("bash", ["-c", yamlCol.update], {
          cwd: col.pwd,
-          stdout: "pipe",
+          stdio: ["ignore", "pipe", "pipe"],
          stderr: "pipe",
        });
-        const output = await new Response(proc.stdout).text();
+        const [output, errorOutput, exitCode] = await new Promise<[string, string, number]>((resolve, reject) => {
-        const errorOutput = await new Response(proc.stderr).text();
+          let out = "";
-        const exitCode = await proc.exited;
+          let err = "";
          proc.stdout?.on("data", (d: Buffer) => { out += d.toString(); });
          proc.stderr?.on("data", (d: Buffer) => { err += d.toString(); });
          proc.on("error", reject);
          proc.on("close", (code) => resolve([out, err, code ?? 1]));
        });
        if (output.trim()) {
          console.log(output.trim().split('\n').map(l => `    ${l}`).join('\n'));
@ -1394,20 +1400,18 @@ async function indexFiles(pwd?: string, globPattern: string = DEFAULT_GLOB, coll
  console.log(`Collection: ${resolvedPwd} (${globPattern})`);
  progress.indeterminate();
-  const glob = new Glob(globPattern);
+  const allFiles: string[] = await fastGlob(globPattern, {
-  const files: string[] = [];
+    cwd: resolvedPwd,
-  for await (const file of glob.scan({ cwd: resolvedPwd, onlyFiles: true, followSymlinks: false })) {
+    onlyFiles: true,
-    // Skip node_modules, hidden folders (.*), and other common excludes
+    followSymbolicLinks: false,
    dot: false,
    ignore: excludeDirs.map(d => `**/${d}/**`),
  });
  // Filter hidden files/folders (dot: false handles top-level but not nested)
  const files = allFiles.filter(file => {
    const parts = file.split("/");
-    const shouldSkip = parts.some(part =>
+    return !parts.some(part => part.startsWith("."));
-      part === "node_modules" ||
+  });
      part.startsWith(".") ||
      excludeDirs.includes(part)
    );
    if (!shouldSkip) {
      files.push(file);
    }
  }
  const total = files.length;
  if (total === 0) {
@ -2046,7 +2050,7 @@ async function querySearch(query: string, opts: OutputOptions, _embedModel: stri
 // Parse CLI arguments using util.parseArgs
 function parseCLI() {
  const { values, positionals } = parseArgs({
-    args: Bun.argv.slice(2), // Skip bun and script path
+    args: process.argv.slice(2), // Skip node and script path
    options: {
      // Global options
      index: {
@ -2186,14 +2190,13 @@ function showHelp(): void {
 }
 async function showVersion(): Promise<void> {
-  const scriptDir = import.meta.dir;
+  const scriptDir = dirname(fileURLToPath(import.meta.url));
  const pkgPath = resolve(scriptDir, "..", "package.json");
  const pkg = JSON.parse(readFileSync(pkgPath, "utf-8"));
  let commit = "";
  try {
-    const result = await $`git -C ${scriptDir} rev-parse --short HEAD`.quiet();
+    commit = execSync(`git -C ${scriptDir} rev-parse --short HEAD`, { encoding: "utf-8", stdio: ["pipe", "pipe", "pipe"] }).trim();
    commit = result.text().trim();
  } catch {
    // Not a git repo or git not available
  }
@ -2203,7 +2206,7 @@ async function showVersion(): Promise<void> {
 }
 // Main CLI - only run if this is the main module
-if (import.meta.main) {
+if (fileURLToPath(import.meta.url) === process.argv[1] || process.argv[1]?.endsWith("/qmd.ts")) {
  const cli = parseCLI();
  if (cli.values.version) {
@ -2442,8 +2445,8 @@ if (import.meta.main) {
      const sub = cli.args[0]; // stop | status | undefined
      // Cache dir for PID/log files — same dir as the index
-      const cacheDir = Bun.env.XDG_CACHE_HOME
+      const cacheDir = process.env.XDG_CACHE_HOME
-        ? resolve(Bun.env.XDG_CACHE_HOME, "qmd")
+        ? resolve(process.env.XDG_CACHE_HOME, "qmd")
        : resolve(homedir(), ".cache", "qmd");
      const pidPath = resolve(cacheDir, "mcp.pid");
@ -2485,10 +2488,10 @@ if (import.meta.main) {
          mkdirSync(cacheDir, { recursive: true });
          const logPath = resolve(cacheDir, "mcp.log");
          const logFd = openSync(logPath, "w"); // truncate — fresh log per daemon run
-          const child = Bun.spawn([process.execPath, import.meta.path, "mcp", "--http", "--port", String(port)], {
+          const tsxLoader = pathJoin(dirname(fileURLToPath(import.meta.url)), "..", "node_modules", "tsx", "dist", "esm", "index.mjs");
-            stdout: logFd,
+          const child = nodeSpawn(process.execPath, ["--import", tsxLoader, fileURLToPath(import.meta.url), "mcp", "--http", "--port", String(port)], {
-            stderr: logFd,
+            stdio: ["ignore", logFd, logFd],
-            stdin: "ignore",
+            detached: true,
          });
          child.unref();
          closeSync(logFd); // parent's copy; child inherited the fd
@ -2561,4 +2564,4 @@ if (import.meta.main) {
    process.exit(0);
  }
-} // end if (import.meta.main)
+} // end if (main module)
--- a/src/store-paths.test.ts
+++ b/src/store-paths.test.ts
@ -10,7 +10,7 @@
 * Run with: bun test store-paths.test.ts
 */
-import { describe, test, expect, beforeEach, afterEach } from "bun:test";
+import { describe, test, expect, beforeEach, afterEach } from "vitest";
 import {
  isAbsolutePath,
  normalizePathSeparators,
@ -27,26 +27,26 @@ let originalProcessCwd: () => string;
 beforeEach(() => {
  // Save original environment
-  originalPWD = Bun.env.PWD;
+  originalPWD = process.env.PWD;
  originalProcessCwd = process.cwd;
 });
 afterEach(() => {
  // Restore original environment
  if (originalPWD !== undefined) {
-    Bun.env.PWD = originalPWD;
+    process.env.PWD = originalPWD;
  } else {
-    delete Bun.env.PWD;
+    delete process.env.PWD;
  }
  process.cwd = originalProcessCwd;
 });
 /**
 * Mock the current working directory for testing.
- * Sets both Bun.env.PWD and process.cwd() to simulate different environments.
+ * Sets both process.env.PWD and process.cwd() to simulate different environments.
 */
 function mockPWD(path: string): void {
-  Bun.env.PWD = path;
+  process.env.PWD = path;
  process.cwd = () => path;
 }
--- a/src/store.helpers.unit.test.ts
+++ b/src/store.helpers.unit.test.ts
@ -0,0 +1,205 @@
 /**
 * Store helper-level unit tests (pure logic, no model/runtime dependency).
 */
 import { describe, test, expect } from "vitest";
 import {
  homedir,
  resolve,
  getDefaultDbPath,
  getPwd,
  getRealPath,
  isVirtualPath,
  parseVirtualPath,
  normalizeVirtualPath,
  normalizeDocid,
  isDocid,
  handelize,
 } from "./store";
 // =============================================================================
 // Path Utilities
 // =============================================================================
 describe("Path Utilities", () => {
  test("homedir returns HOME environment variable", () => {
    expect(homedir()).toBe(process.env.HOME || "/tmp");
  });
  test("resolve handles absolute paths", () => {
    expect(resolve("/foo/bar")).toBe("/foo/bar");
    expect(resolve("/foo", "/bar")).toBe("/bar");
  });
  test("resolve handles relative paths", () => {
    const pwd = process.env.PWD || process.cwd();
    expect(resolve("foo")).toBe(`${pwd}/foo`);
    expect(resolve("foo", "bar")).toBe(`${pwd}/foo/bar`);
  });
  test("resolve normalizes . and ..", () => {
    expect(resolve("/foo/bar/./baz")).toBe("/foo/bar/baz");
    expect(resolve("/foo/bar/../baz")).toBe("/foo/baz");
    expect(resolve("/foo/bar/../../baz")).toBe("/baz");
  });
  test("getDefaultDbPath throws in test mode without INDEX_PATH", () => {
    const originalIndexPath = process.env.INDEX_PATH;
    delete process.env.INDEX_PATH;
    expect(() => getDefaultDbPath()).toThrow("Database path not set");
    if (originalIndexPath) {
      process.env.INDEX_PATH = originalIndexPath;
    }
  });
  test("getDefaultDbPath uses INDEX_PATH when set", () => {
    const originalIndexPath = process.env.INDEX_PATH;
    process.env.INDEX_PATH = "/tmp/test-index.sqlite";
    expect(getDefaultDbPath()).toBe("/tmp/test-index.sqlite");
    expect(getDefaultDbPath("custom")).toBe("/tmp/test-index.sqlite");
    if (originalIndexPath) {
      process.env.INDEX_PATH = originalIndexPath;
    } else {
      delete process.env.INDEX_PATH;
    }
  });
  test("getPwd returns current working directory", () => {
    const pwd = getPwd();
    expect(pwd).toBeTruthy();
    expect(typeof pwd).toBe("string");
  });
  test("getRealPath resolves symlinks", () => {
    const result = getRealPath("/tmp");
    expect(result).toBeTruthy();
    expect(result === "/tmp" || result === "/private/tmp").toBe(true);
  });
 });
 // =============================================================================
 // Handelize Tests
 // =============================================================================
 describe("handelize", () => {
  test("converts to lowercase", () => {
    expect(handelize("README.md")).toBe("readme.md");
    expect(handelize("MyFile.MD")).toBe("myfile.md");
  });
  test("preserves folder structure", () => {
    expect(handelize("a/b/c/d.md")).toBe("a/b/c/d.md");
    expect(handelize("docs/api/README.md")).toBe("docs/api/readme.md");
  });
  test("replaces non-word characters with dash", () => {
    expect(handelize("hello world.md")).toBe("hello-world.md");
    expect(handelize("file (1).md")).toBe("file-1.md");
    expect(handelize("foo@bar#baz.md")).toBe("foo-bar-baz.md");
  });
  test("collapses multiple special chars into single dash", () => {
    expect(handelize("hello   world.md")).toBe("hello-world.md");
    expect(handelize("foo---bar.md")).toBe("foo-bar.md");
    expect(handelize("a  -  b.md")).toBe("a-b.md");
  });
  test("removes leading and trailing dashes from segments", () => {
    expect(handelize("-hello-.md")).toBe("hello.md");
    expect(handelize("--test--.md")).toBe("test.md");
    expect(handelize("a/-b-/c.md")).toBe("a/b/c.md");
  });
  test("converts triple underscore to folder separator", () => {
    expect(handelize("foo___bar.md")).toBe("foo/bar.md");
    expect(handelize("notes___2025___january.md")).toBe("notes/2025/january.md");
    expect(handelize("a/b___c/d.md")).toBe("a/b/c/d.md");
  });
  test("handles complex real-world meeting notes", () => {
    const complexName = "Money Movement Licensing Review - 2025／11／19 10:25 EST - Notes by Gemini.md";
    const result = handelize(complexName);
    expect(result).toBe("money-movement-licensing-review-2025-11-19-10-25-est-notes-by-gemini.md");
    expect(result).not.toContain(" ");
    expect(result).not.toContain("／");
    expect(result).not.toContain(":");
  });
  test("handles unicode characters", () => {
    expect(handelize("日本語.md")).toBe("日本語.md");
    expect(handelize("Зоны и проекты.md")).toBe("зоны-и-проекты.md");
    expect(handelize("café-notes.md")).toBe("café-notes.md");
    expect(handelize("naïve.md")).toBe("naïve.md");
    expect(handelize("日本語-notes.md")).toBe("日本語-notes.md");
  });
  test("handles dates and times in filenames", () => {
    expect(handelize("meeting-2025-01-15.md")).toBe("meeting-2025-01-15.md");
    expect(handelize("notes 2025/01/15.md")).toBe("notes-2025/01/15.md");
    expect(handelize("call_10:30_AM.md")).toBe("call-10-30-am.md");
  });
  test("handles special project naming patterns", () => {
    expect(handelize("PROJECT_ABC_v2.0.md")).toBe("project-abc-v2-0.md");
    expect(handelize("[WIP] Feature Request.md")).toBe("wip-feature-request.md");
    expect(handelize("(DRAFT) Proposal v1.md")).toBe("draft-proposal-v1.md");
  });
  test("handles symbol-only route filenames", () => {
    expect(handelize("routes/api/auth/$.ts")).toBe("routes/api/auth/$.ts");
    expect(handelize("app/routes/$id.tsx")).toBe("app/routes/$id.tsx");
  });
  test("filters out empty segments", () => {
    expect(handelize("a//b/c.md")).toBe("a/b/c.md");
    expect(handelize("/a/b/")).toBe("a/b");
    expect(handelize("///test///")).toBe("test");
  });
  test("throws error for invalid inputs", () => {
    expect(() => handelize("" )).toThrow("path cannot be empty");
    expect(() => handelize("   ")).toThrow("path cannot be empty");
    expect(() => handelize(".md")).toThrow("no valid filename content");
    expect(() => handelize("...")).toThrow("no valid filename content");
    expect(() => handelize("___")).toThrow("no valid filename content");
  });
  test("handles minimal valid inputs", () => {
    expect(handelize("a")).toBe("a");
    expect(handelize("1")).toBe("1");
    expect(handelize("a.md")).toBe("a.md");
  });
  test("normalizes virtual paths", () => {
    expect(normalizeVirtualPath("qmd://docs/readme.md")).toBe("qmd://docs/readme.md");
    expect(normalizeVirtualPath("docs/readme.md")).toBe("docs/readme.md");
  });
  test("detects virtual paths", () => {
    expect(isVirtualPath("qmd://docs/readme.md")).toBe(true);
    expect(isVirtualPath("/tmp/file.md")).toBe(false);
  });
  test("parses virtual paths", () => {
    expect(parseVirtualPath("qmd://docs/readme.md")).toEqual({
      collectionName: "docs",
      path: "readme.md",
    });
  });
  test("normalizes docids", () => {
    expect(normalizeDocid("123456")).toBe("123456");
    expect(normalizeDocid("#123456")).toBe("123456");
  });
  test("checks docid validity", () => {
    expect(isDocid("123456")).toBe(true);
    expect(isDocid("#123456")).toBe(true);
    expect(isDocid("bad-id")).toBe(false);
    expect(isDocid("12345")).toBe(false);
  });
 });
--- a/src/store.ts
+++ b/src/store.ts
@ -11,9 +11,10 @@
 *   const store = createStore();
 */
-import { Database } from "bun:sqlite";
+import Database from "better-sqlite3";
-import { Glob } from "bun";
+import picomatch from "picomatch";
-import { realpathSync, statSync } from "node:fs";
+import { createHash } from "crypto";
 import { realpathSync, statSync, mkdirSync } from "node:fs";
 import * as sqliteVec from "sqlite-vec";
 import {
  LlamaCpp,
@ -42,7 +43,7 @@ import {
 // Configuration
 // =============================================================================
-const HOME = Bun.env.HOME || "/tmp";
+const HOME = process.env.HOME || "/tmp";
 export const DEFAULT_EMBED_MODEL = "embeddinggemma";
 export const DEFAULT_RERANK_MODEL = "ExpedientFalcon/qwen3-reranker:0.6b-q8_0";
 export const DEFAULT_QUERY_MODEL = "Qwen/Qwen3-1.7B";
@ -190,7 +191,7 @@ export function resolve(...paths: string[]): string {
    }
  } else {
    // Start with PWD or cwd, then append the first relative path
-    const pwd = normalizePathSeparators(Bun.env.PWD || process.cwd());
+    const pwd = normalizePathSeparators(process.env.PWD || process.cwd());
    // Extract Windows drive from PWD if present
    if (pwd.length >= 2 && /[a-zA-Z]/.test(pwd[0]!) && pwd[1] === ':') {
@ -261,8 +262,8 @@ export function enableProductionMode(): void {
 export function getDefaultDbPath(indexName: string = "index"): string {
  // Always allow override via INDEX_PATH (for testing)
-  if (Bun.env.INDEX_PATH) {
+  if (process.env.INDEX_PATH) {
-    return Bun.env.INDEX_PATH;
+    return process.env.INDEX_PATH;
  }
  // In non-production mode (tests), require explicit path
@ -273,9 +274,9 @@ export function getDefaultDbPath(indexName: string = "index"): string {
    );
  }
-  const cacheDir = Bun.env.XDG_CACHE_HOME || resolve(homedir(), ".cache");
+  const cacheDir = process.env.XDG_CACHE_HOME || resolve(homedir(), ".cache");
  const qmdCacheDir = resolve(cacheDir, "qmd");
-  try { Bun.spawnSync(["mkdir", "-p", qmdCacheDir]); } catch { }
+  try { mkdirSync(qmdCacheDir, { recursive: true }); } catch { }
  return resolve(qmdCacheDir, `${indexName}.sqlite`);
 }
@ -430,33 +431,6 @@ export function toVirtualPath(db: Database, absolutePath: string): string | null
 // Database initialization
 // =============================================================================
 function setSQLiteFromBrewPrefixEnv(): void {
  const candidates: string[] = [];
  if (process.platform === "darwin") {
    // Use BREW_PREFIX for non-standard Homebrew installs (common on corporate Macs).
    const brewPrefix = Bun.env.BREW_PREFIX || Bun.env.HOMEBREW_PREFIX;
    if (brewPrefix) {
      // Homebrew can place SQLite in opt/sqlite (keg-only) or directly under the prefix.
      candidates.push(`${brewPrefix}/opt/sqlite/lib/libsqlite3.dylib`);
      candidates.push(`${brewPrefix}/lib/libsqlite3.dylib`);
    } else {
      candidates.push("/opt/homebrew/opt/sqlite/lib/libsqlite3.dylib");
      candidates.push("/usr/local/opt/sqlite/lib/libsqlite3.dylib");
    }
  }
  for (const candidate of candidates) {
    try {
      if (statSync(candidate).size > 0) {
        Database.setCustomSQLite(candidate);
        return;
      }
    } catch { }
  }
 }
 setSQLiteFromBrewPrefixEnv();
 function createSqliteVecUnavailableError(reason: string): Error {
  return new Error(
@ -966,7 +940,7 @@ export function getIndexHealth(db: Database): IndexHealthInfo {
 // =============================================================================
 export function getCacheKey(url: string, body: object): string {
-  const hash = new Bun.CryptoHasher("sha256");
+  const hash = createHash("sha256");
  hash.update(url);
  hash.update(JSON.stringify(body));
  return hash.digest("hex");
@ -1082,7 +1056,7 @@ export function vacuumDatabase(db: Database): void {
 // =============================================================================
 export async function hashContent(content: string): Promise<string> {
-  const hash = new Bun.CryptoHasher("sha256");
+  const hash = createHash("sha256");
  hash.update(content);
  return hash.digest("hex");
 }
@ -1163,10 +1137,11 @@ export function findActiveDocument(
  collectionName: string,
  path: string
 ): { id: number; hash: string; title: string } | null {
-  return db.prepare(`
+  const row = db.prepare(`
    SELECT id, hash, title FROM documents
    WHERE collection = ? AND path = ? AND active = 1
-  `).get(collectionName, path) as { id: number; hash: string; title: string } | null;
+  `).get(collectionName, path) as { id: number; hash: string; title: string } | undefined;
  return row ?? null;
 }
 /**
@ -1477,9 +1452,9 @@ export function matchFilesByGlob(db: Database, pattern: string): { filepath: str
    WHERE d.active = 1
  `).all() as { virtual_path: string; body_length: number; path: string; collection: string }[];
-  const glob = new Glob(pattern);
+  const isMatch = picomatch(pattern);
  return allFiles
-    .filter(f => glob.match(f.virtual_path) || glob.match(f.path))
+    .filter(f => isMatch(f.virtual_path) || isMatch(f.path))
    .map(f => ({
      filepath: f.virtual_path,  // Virtual path for precise lookup
      displayPath: f.path,        // Relative path for display
--- a/tsconfig.json
+++ b/tsconfig.json
@ -3,14 +3,13 @@
    // Environment setup & latest features
    "lib": ["ESNext"],
    "target": "ESNext",
-    "module": "Preserve",
+    "module": "nodenext",
    "moduleDetection": "force",
    "jsx": "react-jsx",
    "allowJs": true,
-    // Bundler mode
+    // Node.js module resolution
-    "moduleResolution": "bundler",
+    "moduleResolution": "nodenext",
    "allowImportingTsExtensions": true,
    "verbatimModuleSyntax": true,
    "noEmit": true,
--- a/vitest.config.ts
+++ b/vitest.config.ts
@ -0,0 +1,7 @@
 import { defineConfig } from "vitest/config";
 export default defineConfig({
  test: {
    testTimeout: 30000,
  },
 });